You can use our draft desktop software, PEDS, to enter your draft. More info on PEDS can be found here. PEDS works great for those drafts where everyone will be in one room for an offline draft. You can then transfer the draft results from PEDS to Fantasy Commissioner Web via the "Export Draft Results" option on the Database Tools menu in PEDS. To enter the draft results manually into Fantasy Commissioner Web, the commish can go to the "League Office" menu, choose Add/Drop Players, and choose the players for each fantasy team from a player list (make sure to set the pickup price to $0 on this screen). This usually takes 15-20 minutes to enter 18-player rosters for a 10-team league.
We also have an online draft module in Fantasy Commissioner Web where each owner can enter his picks on-line when his turn comes up and the draft module will coordinate the draft, much like PEDS does. The draft module also allows the commissioner to enter all the draft picks for all the owners, or the commish could enter just some of the picks for owners that are missing.